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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
32
DNase-seq
8
snATAC-seq
7
ATAC-seq
3
total RNA-seq
Assay category
67
DNA binding
47
DNA accessibility
3
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
7
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
July, 2019
3
February, 2020
1
January, 2018
Available data
105
bam
98
bed narrowPeak
93
bigWig
92
bigBed narrowPeak
60
fastq
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
Organism
117
Homo sapiens
Biosample type
61
cell line
48
tissue
8
primary cell
Organ
911
pancreas
774
liver
662
connective tissue
478
adipose tissue
471
epithelium
360
heart
313
kidney
182
brain
177
vasculature
172
blood vessel
159
bone element
112
artery
86
musculature of body
69
blood
69
bodily fluid
48
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
109
AMP
8
T1D
Genome assembly (visualization)
99
hg19
97
GRCh38
Lab
109
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
month_released!
July, 2019
October, 2019
September, 2017
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
total RNA-seq
cell line
GM12878
60
1
tissue
muscle of leg
7
13
muscle of arm
17
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 8 more…
primary cell
peripheral blood mononuclear cell
8
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