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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
133
ChIP-seq
8
snATAC-seq
7
ATAC-seq
6
WGBS
4
pCHi-C
2
DNase-seq
1
RNA microarray
Assay category
389
Transcription
133
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
July, 2019
8
January, 2021
3
March, 2020
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
490
bam
468
bigWig
391
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
549
Homo sapiens
Biosample type
480
tissue
61
cell line
8
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
542
AMP
8
T1D
Genome assembly (visualization)
469
hg19
466
GRCh38
Lab
542
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
550 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
2
white adipose tissue
12
+ See 4 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
white fat cell
1
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