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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
9
ChIP-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
19
DNA accessibility
9
DNA binding
9
Transcription
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
19
April, 2020
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
1
January, 2018
1
March, 2020
Available data
9
bam
9
fastq
4
bigWig
3
bed narrowPeak
3
bigBed narrowPeak
1
tsv
Organism
37
Homo sapiens
Biosample type
20
tissue
10
cell line
8
primary cell
Organ
921
pancreas
626
connective tissue
502
epithelium
462
adipose tissue
443
liver
351
heart
333
kidney
265
brain
215
vasculature
211
blood vessel
159
bone element
133
artery
117
limb
86
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
LungMap
11
AMP
8
T1D
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
19
Xin Sun, UCSD
11
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
July, 2019
organ_slims!
esophagus
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
38 results
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snATAC-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
tissue
lung
10
9
1
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
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