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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
35
DNA accessibility
31
DNA binding
13
Transcription
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
July, 2019
18
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
64
bam
40
bigWig
35
bed broadPeak
35
bed narrowPeak
35
bigBed broadPeak
35
bigBed narrowPeak
32
bed bed3+
19
tagAlign
15
tsv
11
fastq
1
bed bed3
Organism
81
Homo sapiens
Biosample type
70
tissue
11
primary cell
Organ
789
pancreas
678
liver
588
connective tissue
adipose tissue
418
epithelium
313
kidney
271
heart
159
bone element
153
vasculature
149
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
53
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
37
GRCh38
30
hg19
Lab
81
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
organ_slims!
adipose tissue
skeleton
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
14
3
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
Ammon's horn
1
1
1
frontal cortex
2
1
+ See 27 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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