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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
43
ATAC-seq
36
DNase-seq
36
total RNA-seq
6
pCHi-C
Assay category
223
DNA binding
79
DNA accessibility
36
Transcription
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
29
control
4
RNA binding protein
4
transcription factor
Date released
107
October, 2019
91
November, 2017
40
February, 2023
37
June, 2019
28
May, 2019
July, 2019
16
October, 2017
13
February, 2020
8
February, 2021
2
March, 2020
2
November, 2018
Available data
245
bam
243
bed narrowPeak
212
bigWig
132
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
36
bed bed3+
21
fastq
20
tsv
5
bed bed3
4
txt
1
tagAlign bed3+
Organism
344
Homo sapiens
Biosample type
326
tissue
18
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
344
AMP
Genome assembly (visualization)
219
GRCh38
192
hg19
Lab
344
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
pCHi-C
tissue
brain
20
1
14
1
layer of hippocampus
23
islet of Langerhans
2
2
14
4
retina
15
3
3
caudate nucleus
15
1
1
+ See 89 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
retinal pigment epithelial cell
3
1
astrocyte of the hippocampus
1
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