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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 32DNase-seq
  • 13total RNA-seq
  • 3ATAC-seq
  • 2pCHi-C
Assay category
  • 218DNA binding
  • 35DNA accessibility
  • 13Transcription
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 28control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 230bam
  • 206bigWig
  • 202bed narrowPeak
  • 126bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 32bed bed3+
  • 21fastq
  • 15tsv
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 268Homo sapiens
Biosample type
  • 254tissue
  • 14primary cell
Organ
  • 940pancreas
  • 781liver
  • 666connective tissue
  • 511epithelium
  • 479adipose tissue
  • 368heart
  • 343kidney
  • 268brain
  • 224vasculature
  • 219blood vessel
  • 159bone element
  • 138artery
  • 117limb
  • 86musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 268AMP
Genome assembly (visualization)
  • 205GRCh38
  • 147hg19
Lab
  • 268AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

268 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain201411
layer of hippocampus23
caudate nucleus1511
substantia nigra161
angular gyrus15
primary cell
astrocyte of the cerebellum31
brain microvascular endothelial cell31
choroid plexus epithelial cell31
astrocyte of the hippocampus1
brain pericyte1
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