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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 93single cell RNA-seq
  • 62total RNA-seq
  • 43ATAC-seq
  • 30DNase-seq
  • 3Hi-C
  • 3pCHi-C
Assay category
  • 155Transcription
  • 134DNA binding
  • 73DNA accessibility
  • 33D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 36February, 2023
  • 35June, 2019
  • July, 2019
  • 21May, 2019
  • 8October, 2019
  • 7March, 2020
  • 3February, 2020
  • 3May, 2021
Available data
  • 203bigWig
  • 190bam
  • 187bed narrowPeak
  • 157tsv
  • 94bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 368Homo sapiens
Biosample type
  • 293tissue
  • 66cell line
  • 8primary cell
  • 1in vitro differentiated cells
Organ
  • 940pancreas
  • 781liver
  • 666connective tissue
  • 511epithelium
  • 479adipose tissue
  • 368heart
  • 343kidney
  • 268brain
  • 224vasculature
  • 219blood vessel
  • 159bone element
  • 138artery
  • 117limb
  • 86musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 368AMP
Genome assembly (visualization)
  • 245GRCh38
  • 171hg19
Lab
  • 328AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 5inconsistent ontology term
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

368 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
heart left ventricle35181311
left cardiac atrium40181
coronary artery51352
heart1412181
heart right ventricle13171111
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast53
in vitro differentiated cells
cardiac fibroblast1
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