Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 55total RNA-seq
  • 52ChIP-seq
  • 6snATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
Assay category
  • 162DNA accessibility
  • 119Transcription
  • 52DNA binding
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 130August, 2021
  • 81June, 2019
  • 47September, 2023
  • 30October, 2019
  • 23April, 2019
  • 14May, 2023
  • July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 182bed narrowPeak
  • 137bam
  • 124bigWig
  • 103bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 18tsv
  • 5csv
  • 1hic
Organism
  • 343Homo sapiens
Biosample type
  • 295tissue
  • 29primary cell
  • 19cell line
Organ
  • 940pancreas
  • 781liver
  • 666connective tissue
  • 511epithelium
  • 479adipose tissue
  • 368heart
  • 343kidney
  • 268brain
  • 224vasculature
  • 219blood vessel
  • 159bone element
  • 138artery
  • 117limb
  • 86musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 296AMP
  • 47KPMP
Genome assembly (visualization)
  • 199GRCh38
  • 118hg19
Lab
  • 152AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 22inconsistent ontology term
  • 7audit script error
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

343 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney137564492761
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule110
kidney epithelial cell15
kidney tubule cell31
kidney glomerular epithelial cell21
glomerular visceral epithelial cell2
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
glomerular visceral epithelial cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego