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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
ChIP-seq
185
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
444
DNA binding
186
Transcription
29
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
30
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
601
bigWig
573
bam
441
bed narrowPeak
388
fastq
358
bigBed narrowPeak
167
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
11
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
673
Homo sapiens
Biosample type
341
cell line
307
tissue
14
in vitro differentiated cells
11
primary cell
Organ
887
pancreas
673
liver
631
connective tissue
481
epithelium
455
adipose tissue
348
heart
331
kidney
240
brain
202
vasculature
198
blood vessel
159
bone element
129
artery
100
limb
80
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
673
AMP
Genome assembly (visualization)
602
hg19
523
GRCh38
Lab
606
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2019
organ_slims!
skin of body
target.investigated_as!
control
BIOSAMPLE
ASSAY
673 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
2
2
2
1
tissue
liver
102
165
20
2
3
1
1
1
1
right lobe of liver
7
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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