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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
  • 185total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 4WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2STARR-seq
  • 1RRBS
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 552DNA binding
  • 186Transcription
  • 29DNA accessibility
  • 5DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 63December, 2017
  • 54August, 2017
  • 53November, 2018
  • 40May, 2022
  • 35August, 2021
  • July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 674bam
  • 614bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 167tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 12bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1csv
  • 1vcf
Organism
  • 781Homo sapiens
Biosample type
  • 401cell line
  • 353tissue
  • 15in vitro differentiated cells
  • 12primary cell
Organ
  • 940pancreas
  • 781liver
  • 666connective tissue
  • 511epithelium
  • 479adipose tissue
  • 368heart
  • 343kidney
  • 268brain
  • 224vasculature
  • 219blood vessel
  • 159bone element
  • 138artery
  • 117limb
  • 86musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 781AMP
Genome assembly (visualization)
  • 616hg19
  • 524GRCh38
Lab
  • 710AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

781 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG237814112221
tissue
liver14516520231111
right lobe of liver10112
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte451
Liver fetal (hepatocyte)1
hepatic stellate cell1
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