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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
RRBS
3
total RNA-seq
2
Hi-C
2
pCHi-C
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
36
DNA binding
4
DNA methylation
4
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
31
histone
31
histone modification
16
broad histone mark
15
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
6
March, 2020
July, 2019
4
October, 2019
2
May, 2022
1
February, 2020
1
January, 2018
Available data
25
bigWig
22
bed narrowPeak
15
tagAlign
14
bed broadPeak
13
bam
9
bigBed narrowPeak
5
tsv
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
51
Homo sapiens
Biosample type
40
tissue
11
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
30
hg19
11
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
July, 2019
organ_slims!
limb
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
psoas muscle
2
2
1
islet of Langerhans
4
left ventricle myocardium
1
ovary
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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