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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 4RRBS
  • 4total RNA-seq
  • 2Hi-C
  • 1ATAC-seq
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 39DNA binding
  • 35DNA accessibility
  • 5Transcription
  • 4DNA methylation
  • 23D chromatin structure
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 26August, 2017
  • July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 63bigWig
  • 60bed narrowPeak
  • 52bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 5tsv
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 86Homo sapiens
Biosample type
  • 75tissue
  • 11primary cell
Organ
  • 940pancreas
  • 781liver
  • 666connective tissue
  • 511epithelium
  • 479adipose tissue
  • 368heart
  • 343kidney
  • 268brain
  • 224vasculature
  • 219blood vessel
  • 159bone element
  • 138artery
  • 117limb
  • 86musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 86AMP
Genome assembly (visualization)
  • 68hg19
  • 48GRCh38
Lab
  • 86AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

86 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue224111
muscle of leg713
muscle of arm17
psoas muscle221
forelimb muscle1
primary cell
skeletal muscle satellite cell8
skeletal muscle cell21
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