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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 56total RNA-seq
  • 44ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 102DNA binding
  • 62Transcription
  • 56DNA accessibility
  • 33D chromatin structure
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 176bam
  • 145bigWig
  • 131bed narrowPeak
  • 83bigBed narrowPeak
  • 63tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 11bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bedpe bed3+
  • 1tar
Organism
  • 224Homo sapiens
Biosample type
  • 126tissue
  • 66cell line
  • 32primary cell
Organ
  • 940pancreas
  • 781liver
  • 666connective tissue
  • 511epithelium
  • 479adipose tissue
  • 368heart
  • 343kidney
  • 268brain
  • 224vasculature
  • 219blood vessel
  • 159bone element
  • 138artery
  • 117limb
  • 86musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 224AMP
Genome assembly (visualization)
  • 183GRCh38
  • 155hg19
Lab
  • 224AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

224 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery51352
tibial artery23112
aorta131411
ascending aorta1611
thoracic aorta16
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell31
choroid plexus epithelial cell31
kidney capillary endothelial cell1
smooth muscle cell of the brain vasculature1
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