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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181ChIP-seq
  • 167total RNA-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 256Transcription
  • 181DNA binding
  • 138DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • July, 2019
  • 33August, 2017
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 447bam
  • 431bigWig
  • 268tsv
  • 171bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 38bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 621Homo sapiens
Biosample type
  • 288primary cell
  • 220tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 138pancreas
  • 76epithelium
  • 62brain
  • 51connective tissue
  • 19heart
  • 15adipose tissue
  • 14liver
  • 12kidney
  • 8bone element
  • 8skeleton
  • 5blood vessel
  • 5musculature of body
  • 5vasculature
  • 3eye
  • 3limb
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 479AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 458hg19
  • 393GRCh38
Lab
  • 447AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 51inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

621 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
snATAC-seq
MeRIP-seq
Capture-C
snDrop-seq
DNAme array
FAIRE-seq
primary cell
monocyte472621
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans22101861224
brain612
liver6111
heart1141
pancreas11111
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11541
adipocyte7141
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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