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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
73
ChIP-seq
32
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
1
RRBS
Assay category
406
Transcription
73
DNA binding
33
DNA accessibility
7
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
October, 2019
13
July, 2019
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
441
bam
423
bigWig
406
tsv
44
fastq
39
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
521
Homo sapiens
Biosample type
518
tissue
3
primary cell
1
in vitro differentiated cells
Organ
924
pancreas
782
liver
662
connective tissue
489
adipose tissue
469
epithelium
350
heart
243
kidney
182
vasculature
178
blood vessel
170
brain
159
bone element
113
artery
69
blood
69
bodily fluid
53
musculature of body
37
embryo
33
eye
25
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
522
AMP
Genome assembly (visualization)
452
hg19
423
GRCh38
Lab
522
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
March, 2023
October, 2019
BIOSAMPLE
ASSAY
522 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
retina
3
15
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primary cell
mesenchymal stem cell of adipose
1
1
retinal pigment epithelial cell
1
in vitro differentiated cells
white fat cell
1
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