Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
79
ChIP-seq
34
ATAC-seq
7
pCHi-C
6
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
79
DNA binding
35
DNA accessibility
7
DNA methylation
Target of assay
38
histone
38
histone modification
24
control
20
broad histone mark
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
26
October, 2019
23
October, 2018
13
July, 2019
June, 2019
3
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
441
bam
424
bigWig
407
tsv
44
fastq
39
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
548
Homo sapiens
Biosample type
545
tissue
3
primary cell
1
in vitro differentiated cells
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
549
AMP
Genome assembly (visualization)
453
hg19
423
GRCh38
Lab
549
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
March, 2023
BIOSAMPLE
ASSAY
549 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
WGBS
small RNA-seq
DNase-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
1
3
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
14
6
1
4
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
+ See 6 more…
primary cell
mesenchymal stem cell of adipose
1
1
retinal pigment epithelial cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download