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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
175
DNA binding
24
Transcription
6
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
150
histone
150
histone modification
105
narrow histone mark
45
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
June, 2019
May, 2019
18
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
176
bam
160
bigWig
142
bed narrowPeak
104
tagAlign
66
bigBed narrowPeak
26
tsv
14
bed broadPeak
11
fastq
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
212
Homo sapiens
Biosample type
196
tissue
16
primary cell
Organ
935
pancreas
789
liver
665
connective tissue
499
epithelium
489
adipose tissue
337
heart
268
kidney
212
brain
179
vasculature
175
blood vessel
159
bone element
134
artery
83
limb
69
blood
69
bodily fluid
54
eye
46
musculature of body
43
nerve
37
embryo
24
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
212
AMP
Genome assembly (visualization)
155
GRCh38
113
hg19
Lab
212
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
June, 2019
May, 2019
October, 2017
BIOSAMPLE
ASSAY
212 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
substantia nigra
16
1
caudate nucleus
15
1
cingulate gyrus
14
middle frontal area 46
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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