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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
Assay category
119
DNA binding
21
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
44
histone
44
histone modification
30
broad histone mark
22
control
14
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
135
bam
108
bed narrowPeak
108
bigWig
100
bigBed narrowPeak
60
fastq
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
152
Homo sapiens
Biosample type
83
tissue
61
cell line
8
primary cell
Organ
940
pancreas
789
liver
connective tissue
499
epithelium
490
adipose tissue
337
heart
268
kidney
228
brain
179
vasculature
175
blood vessel
159
bone element
134
artery
83
limb
69
blood
69
bodily fluid
54
eye
46
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
8
T1D
Genome assembly (visualization)
113
GRCh38
113
hg19
Lab
144
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
June, 2019
May, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
152 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 6 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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