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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
18
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
GRO-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
51
DNA binding
21
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
11
control
3
transcription factor
Date released
June, 2019
26
August, 2017
13
December, 2017
13
February, 2018
10
July, 2019
8
August, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
May, 2021
2
May, 2022
Available data
54
bigWig
48
bam
33
bed narrowPeak
29
fastq
21
tsv
15
tagAlign
13
bed broadPeak
6
bigBed narrowPeak
4
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
88
Homo sapiens
Biosample type
50
tissue
27
in vitro differentiated cells
8
cell line
3
primary cell
Organ
881
pancreas
789
liver
664
connective tissue
490
adipose tissue
478
epithelium
355
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
158
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
35
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
59
hg19
39
GRCh38
1
hg18
Lab
88
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
June, 2019
May, 2021
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
GRO-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
left ventricle myocardium
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
cell line
H1-hESC
8
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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