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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
568
ChIP-seq
188
total RNA-seq
23
ATAC-seq
8
snATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
568
DNA binding
192
Transcription
35
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
114
control
99
histone modification
98
histone
82
recombinant protein
68
RNA binding protein
59
narrow histone mark
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
68
November, 2018
53
December, 2017
40
May, 2022
35
August, 2017
33
August, 2021
28
December, 2018
23
January, 2019
10
July, 2019
8
January, 2021
5
December, 2019
October, 2019
3
February, 2021
3
March, 2020
June, 2019
1
February, 2020
1
January, 2018
Available data
706
bam
642
bigWig
500
fastq
461
bed narrowPeak
389
bigBed narrowPeak
173
tsv
68
tagAlign
53
bed broadPeak
53
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
812
Homo sapiens
Biosample type
453
cell line
333
tissue
18
primary cell
8
in vitro differentiated cells
Organ
850
pancreas
743
liver
622
connective tissue
469
adipose tissue
437
epithelium
296
heart
231
kidney
160
vasculature
159
bone element
156
blood vessel
113
artery
103
brain
69
blood
69
bodily fluid
37
musculature of body
33
embryo
33
eye
21
spleen
20
lung
17
limb
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
804
AMP
8
T1D
Genome assembly (visualization)
644
hg19
551
GRCh38
Lab
734
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
812 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
2
1
GM12878
60
1
tissue
liver
121
166
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
primary cell
hepatocyte
3
5
1
peripheral blood mononuclear cell
8
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
8
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