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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
8
total RNA-seq
5
ChIP-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
33
DNA accessibility
8
Transcription
5
DNA binding
4
3D chromatin structure
2
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
narrow histone mark
1
control
Date released
October, 2019
June, 2019
31
February, 2023
6
February, 2021
6
July, 2019
5
May, 2019
4
February, 2020
Available data
37
bed narrowPeak
12
bam
8
tsv
5
bigWig
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
52
Homo sapiens
Biosample type
51
tissue
1
primary cell
Organ
854
pancreas
724
liver
634
connective tissue
477
adipose tissue
431
epithelium
314
heart
234
kidney
166
vasculature
163
blood vessel
159
bone element
127
brain
111
artery
68
blood
68
bodily fluid
44
musculature of body
33
eye
29
embryo
23
spleen
20
lung
19
limb
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
52
AMP
Genome assembly (visualization)
38
hg19
11
GRCh38
Lab
52
AMP-T2D consortium
month_released!
June, 2019
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
RRBS
WGBS
tissue
retina
15
3
pigmented layer of retina
12
2
muscle of leg
5
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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primary cell
retinal pigment epithelial cell
1
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