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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
8
total RNA-seq
7
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
11
Transcription
8
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
October, 2019
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
27
bigWig
25
bed narrowPeak
20
bam
15
tagAlign
13
bed broadPeak
11
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
61
Homo sapiens
Biosample type
58
tissue
3
primary cell
Organ
924
pancreas
782
liver
662
connective tissue
489
adipose tissue
469
epithelium
350
heart
243
kidney
182
vasculature
178
blood vessel
170
brain
159
bone element
113
artery
69
blood
69
bodily fluid
53
musculature of body
37
embryo
33
eye
25
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
61
AMP
Genome assembly (visualization)
38
hg19
18
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
June, 2019
October, 2019
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
distal epiphysis of femur
1
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primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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