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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
50
ATAC-seq
11
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
61
Transcription
50
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
68
February, 2021
43
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
June, 2019
1
February, 2020
1
March, 2020
Available data
76
bam
62
bigWig
58
tsv
53
bed narrowPeak
6
tagAlign
4
bed bed3
4
txt
3
bigBed narrowPeak
Organism
123
Homo sapiens
Biosample type
66
cell line
55
tissue
2
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
107
GRCh38
76
hg19
Lab
123
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
June, 2019
organ_slims!
limb
BIOSAMPLE
ASSAY
123 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 4 more…
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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