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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 4DNase-seq
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 99DNA binding
  • 67Transcription
  • 51DNA accessibility
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 11July, 2019
  • 6August, 2021
  • June, 2019
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 175bam
  • 145bigWig
  • 124bed narrowPeak
  • 74bigBed narrowPeak
  • 68tsv
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3+
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 225Homo sapiens
Biosample type
  • 130tissue
  • 66cell line
  • 29primary cell
Organ
  • 942pancreas
  • 789liver
  • 666connective tissue
  • 504epithelium
  • 490adipose tissue
  • 358heart
  • 273kidney
  • 256brain
  • 229vasculature
  • 225blood vessel
  • 159bone element
  • 139artery
  • 90limb
  • 69blood
  • 69bodily fluid
  • 54eye
  • 53musculature of body
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 225AMP
Genome assembly (visualization)
  • 182GRCh38
  • 155hg19
Lab
  • 225AMP-T2D consortium
Audit category:
  • 1audit script error
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

225 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery5136
tibial artery23112
aorta1314121
thoracic aorta1621
ascending aorta162
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell31
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
smooth muscle cell of the coronary artery1
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