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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 141ChIP-seq
  • 25ATAC-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3DNase-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 141DNA binding
  • 28DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 70histone
  • 70histone modification
  • 40broad histone mark
  • 39transcription factor
  • 32control
  • 29narrow histone mark
  • 9RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 125August, 2017
  • 23October, 2018
  • 18July, 2019
  • June, 2019
  • 14February, 2023
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 575bam
  • 555bigWig
  • 478tsv
  • 101fastq
  • 60bed narrowPeak
  • 22tagAlign
  • 21bed bed3+
  • 13bigBed narrowPeak
  • 6bed bed3
  • 4bed bedgraph
  • 4bed broadPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3bigBed broadPeak
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 665Homo sapiens
Biosample type
  • 546tissue
  • 97in vitro differentiated cells
  • 22primary cell
  • 1stem cell
Organ
  • 942pancreas
  • 789liver
  • 666connective tissue
  • 504epithelium
  • 490adipose tissue
  • 358heart
  • 273kidney
  • 256brain
  • 229vasculature
  • 225blood vessel
  • 159bone element
  • 139artery
  • 90limb
  • 69blood
  • 69bodily fluid
  • 54eye
  • 53musculature of body
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 665AMP
  • 1T1D
Genome assembly (visualization)
  • 575hg19
  • 551GRCh38
Lab
  • 661AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

666 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
DNase-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511111
in vitro differentiated cells
adipocyte567811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast5211
pancreatic stellate cell4
mesenchymal stem cell of adipose11
adult endothelial progenitor cell1
brain pericyte1
stem cell
mesenchymal stem cell1
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