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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 93single cell RNA-seq
  • 72total RNA-seq
  • 47ATAC-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 129DNA binding
  • 47DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 95histone
  • 95histone modification
  • 57broad histone mark
  • 38narrow histone mark
  • 18control
  • 16transcription factor
  • 10RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 36February, 2023
  • June, 2019
  • 25July, 2019
  • 21May, 2019
  • 8October, 2019
  • 7March, 2020
  • 3February, 2020
  • 3May, 2021
Available data
  • 191bigWig
  • 176bam
  • 168tsv
  • 158bed narrowPeak
  • 61bigBed narrowPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 358Homo sapiens
Biosample type
  • 286tissue
  • 66cell line
  • 5primary cell
  • 1in vitro differentiated cells
Organ
  • 942pancreas
  • 789liver
  • 666connective tissue
  • 504epithelium
  • 490adipose tissue
  • 358heart
  • 273kidney
  • 256brain
  • 229vasculature
  • 225blood vessel
  • 159bone element
  • 139artery
  • 90limb
  • 69blood
  • 69bodily fluid
  • 54eye
  • 53musculature of body
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 358AMP
Genome assembly (visualization)
  • 233GRCh38
  • 158hg19
Lab
  • 318AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 1inconsistent ontology term
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

358 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle3518324111
left cardiac atrium4018
coronary artery5136
heart right ventricle13171211
right cardiac atrium61811
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac atrium fibroblast1
cardiac fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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