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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
8
ATAC-seq
7
total RNA-seq
6
DNase-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
15
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
102
bam
74
bigWig
73
bed narrowPeak
65
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
tsv
6
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
112
Homo sapiens
Biosample type
90
tissue
22
primary cell
Organ
934
pancreas
789
liver
665
connective tissue
503
epithelium
489
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
19
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
81
hg19
76
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
June, 2019
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
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