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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 4DNase-seq
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 102DNA binding
  • 67Transcription
  • 51DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 178bam
  • 148bigWig
  • 126bed narrowPeak
  • 76bigBed narrowPeak
  • 68tsv
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 6bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 229Homo sapiens
Biosample type
  • 130tissue
  • 66cell line
  • 33primary cell
Organ
  • 942pancreas
  • 789liver
  • 666connective tissue
  • 504epithelium
  • 490adipose tissue
  • 358heart
  • 273kidney
  • 256brain
  • 229vasculature
  • 225blood vessel
  • 159bone element
  • 139artery
  • 90limb
  • 69blood
  • 69bodily fluid
  • 54eye
  • 54musculature of body
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 229AMP
Genome assembly (visualization)
  • 184GRCh38
  • 159hg19
Lab
  • 229AMP-T2D consortium
Audit category:
  • 1audit script error
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

229 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
DNase-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery5136
tibial artery23112
aorta1314121
thoracic aorta1621
ascending aorta162
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell31
choroid plexus epithelial cell31
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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