Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
256
gene expression
188
accessible chromatin
168
candidate regulatory elements
155
target gene predictions
92
differential activity
80
chromatin state
54
binding sites
41
variant allelic effects
36
histone modifications
7
eQTL
2
caQTL
Date released
242
February, 2021
232
September, 2022
155
September, 2023
129
November, 2021
76
February, 2024
39
May, 2021
38
March, 2023
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
10
May, 2024
10
October, 2022
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
5
March, 2024
5
October, 2019
4
January, 2022
3
August, 2017
2
May, 2022
1
July, 2020
1
November, 2019
Available data
644
bed bed3+
327
tsv
177
bigWig
78
txt
77
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1079
Homo sapiens
Biosample type
851
primary cell
102
cell line
101
tissue
25
in vitro differentiated cells
Organ
934
epithelium
637
kidney
448
connective tissue
445
brain
369
musculature of body
305
lung
279
intestine
273
pancreas
263
vasculature
252
heart
238
limb
206
bodily fluid
205
embryo
200
blood vessel
196
skin of body
195
blood
167
large intestine
153
liver
140
extraembryonic component
116
stomach
103
eye
88
adipose tissue
84
bone element
83
mammary gland
83
small intestine
81
uterus
73
prostate gland
72
adrenal gland
72
artery
71
placenta
63
ureter
61
penis
54
lymph node
48
thymus
46
gonad
43
esophagus
41
spinal cord
33
spleen
24
nerve
24
testis
23
lymphatic vessel
22
lymphoid tissue
22
ovary
22
thyroid gland
22
vein
18
mouth
18
skeleton
15
bronchus
13
bone marrow
13
pituitary gland
12
breast
10
vagina
9
tongue
9
urinary bladder
4
trachea
3
nose
1
pericardium
Project
766
AMP
155
KPMP
129
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
724
hg19
277
GRCh38
month_released!
June, 2020
BIOSAMPLE
TYPE
1079 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
3
7
2
2
1
1
2
hepatocyte
13
7
2
3
1
1
2
4
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
1
2
1
1
1
endothelial cell of umbilical vein
1
6
4
5
2
1
+ See 151 more…
cell line
EndoC_BH1
8
8
1
3
1
GM23248
2
1
1
1
1
SK-MEL-5
2
1
1
1
iPS DF 19.11
2
2
1
RPMI7951
2
1
1
+ See 23 more…
tissue
pigmented layer of retina
20
thyroid gland
8
5
4
1
breast epithelium
5
3
2
esophagus squamous epithelium
6
2
2
lower leg skin
6
2
2
+ See 22 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
hepatocyte(AFP)
3
pancreatic ductal cell
3
foreskin keratinocyte
1
1
+ See 5 more…
See all biosamples
Download