Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
77
candidate regulatory elements
50
target gene predictions
40
chromatin state
6
binding sites
5
histone modifications
4
accessible chromatin
3
eQTL
3
gene expression
1
variant allelic effects
Date released
110
September, 2022
50
February, 2021
June, 2020
8
November, 2021
6
May, 2021
4
February, 2024
3
August, 2017
3
January, 2022
3
March, 2024
1
March, 2020
1
October, 2022
Available data
146
bed bed3+
37
bed bed9
4
bigWig
3
tsv
Organism
189
Homo sapiens
Biosample type
150
tissue
30
cell line
9
primary cell
Organ
934
epithelium
637
kidney
448
connective tissue
445
brain
369
musculature of body
305
lung
279
intestine
273
pancreas
vasculature
252
heart
238
limb
206
bodily fluid
205
embryo
200
blood vessel
196
skin of body
195
blood
167
large intestine
153
liver
140
extraembryonic component
116
stomach
103
eye
88
adipose tissue
84
bone element
83
mammary gland
83
small intestine
81
uterus
73
prostate gland
72
adrenal gland
72
artery
71
placenta
63
ureter
61
penis
54
lymph node
48
thymus
46
gonad
43
esophagus
41
spinal cord
33
spleen
24
nerve
24
testis
23
lymphatic vessel
22
lymphoid tissue
22
ovary
22
thyroid gland
22
vein
18
mouth
18
skeleton
15
bronchus
13
bone marrow
13
pituitary gland
12
breast
10
vagina
9
tongue
9
urinary bladder
4
trachea
3
nose
1
pericardium
Project
181
AMP
8
ENCODE
Genome assembly (visualization)
183
hg19
50
GRCh38
month_released!
June, 2020
organ_slims!
vasculature
BIOSAMPLE
TYPE
189 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
accessible chromatin
eQTL
gene expression
variant allelic effects
tissue
large intestine
27
14
13
1
sigmoid colon
10
7
5
thyroid gland
8
5
4
1
transverse colon
8
5
4
1
colonic mucosa
4
2
3
1
+ See 9 more…
cell line
HT-29
2
2
1
1
1
HCT116
2
3
1
SW480
2
1
1
1
1
HCT-116 cell
1
2
RKO
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
thyroid follicular cell
1
1
1
See all biosamples
Download