Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
182
candidate regulatory elements
177
target gene predictions
116
accessible chromatin
115
chromatin state
79
histone modifications
68
gene expression
67
binding sites
46
eQTL
41
Fine-mapped variants
33
differential activity
28
variant allelic effects
2
sQTL
2
variant to gene
1
pQTL
Date released
299
September, 2022
215
February, 2021
54
February, 2024
48
May, 2021
47
March, 2020
47
March, 2023
37
June, 2020
33
January, 2020
25
May, 2020
25
October, 2022
22
January, 2022
20
February, 2020
20
January, 2021
18
November, 2021
11
August, 2017
11
August, 2021
7
August, 2018
6
October, 2019
4
May, 2019
November, 2019
3
September, 2023
2
March, 2024
1
April, 2019
1
February, 2023
1
January, 2018
June, 2021
Available data
655
bed bed3+
144
tsv
103
bed bed9
75
bigWig
13
bigBed narrowPeak
7
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
956
Homo sapiens
Biosample type
465
tissue
315
cell line
169
primary cell
7
in vitro differentiated cells
1
stem cell
Organ
948
epithelium
652
kidney
465
brain
459
connective tissue
375
musculature of body
311
lung
289
intestine
274
pancreas
263
vasculature
252
heart
242
limb
218
bodily fluid
215
embryo
207
blood
204
skin of body
201
blood vessel
174
large intestine
155
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
73
adrenal gland
73
artery
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
24
nerve
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
917
AMP
20
T1D
18
ENCODE
2
community
Genome assembly (visualization)
822
hg19
263
GRCh38
month_released!
June, 2021
November, 2019
BIOSAMPLE
TYPE
957 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
histone modifications
gene expression
binding sites
eQTL
Fine-mapped variants
differential activity
variant allelic effects
sQTL
variant to gene
pQTL
tissue
brain
29
16
2
17
3
1
1
2
1
islet of Langerhans
1
5
3
1
11
2
13
2
1
2
2
body of pancreas
8
5
4
2
1
3
1
caudate nucleus
5
3
2
4
1
1
2
3
1
pancreas
5
5
5
3
1
1
1
1
+ See 70 more…
cell line
K562
7
23
1
7
1
2
EndoC_BH1
1
7
8
3
1
GM12878
2
8
1
2
1
2
SK-N-DZ
4
2
1
2
1
SK-N-SH
4
3
2
1
+ See 46 more…
primary cell
pancreatic ductal cell
3
6
2
3
1
3
1
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
4
5
3
3
1
+ See 23 more…
in vitro differentiated cells
pancreatic ductal cell
3
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download