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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
34
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
Assay category
112
DNA binding
40
DNA accessibility
24
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
27
October, 2019
18
July, 2019
18
May, 2019
14
October, 2017
12
February, 2020
March, 2020
2
November, 2018
1
February, 2023
Available data
152
bam
126
bigWig
105
bed narrowPeak
102
bigBed narrowPeak
64
tagAlign
43
bed broadPeak
39
bigBed broadPeak
37
bed bed3+
24
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hic
1
tar
Organism
182
Homo sapiens
Biosample type
149
tissue
33
primary cell
Organ
862
pancreas
728
liver
649
connective tissue
478
adipose tissue
470
epithelium
346
heart
337
kidney
206
vasculature
201
blood vessel
167
brain
159
bone element
135
artery
107
limb
78
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
22
spleen
19
lung
18
ureter
16
skeleton
15
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
182
AMP
Genome assembly (visualization)
117
GRCh38
83
hg19
Lab
182
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
March, 2020
March, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 28 more…
primary cell
endothelial cell of umbilical vein
11
2
1
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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