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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
37
DNA accessibility
28
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
May, 2019
March, 2020
2
November, 2018
1
February, 2023
Available data
74
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
24
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
94
Homo sapiens
Biosample type
76
tissue
18
primary cell
Organ
783
pancreas
686
liver
604
connective tissue
458
adipose tissue
424
epithelium
320
kidney
281
heart
159
bone element
147
vasculature
142
blood vessel
118
artery
94
brain
72
limb
68
blood
68
bodily fluid
58
eye
57
musculature of body
25
embryo
19
lung
19
nerve
18
spleen
18
ureter
16
skeleton
6
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
94
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
May, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
94 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
layer of hippocampus
3
+ See 27 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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