Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
251
gene expression
199
accessible chromatin
124
target gene predictions
119
candidate regulatory elements
92
differential activity
57
chromatin state
46
binding sites
41
variant allelic effects
29
histone modifications
5
eQTL
2
caQTL
Date released
204
February, 2021
163
September, 2022
155
September, 2023
127
November, 2021
76
February, 2024
38
March, 2023
34
May, 2021
27
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
November, 2022
14
January, 2020
12
February, 2023
10
May, 2024
9
February, 2020
7
April, 2020
7
October, 2022
6
August, 2018
March, 2020
5
October, 2019
4
March, 2024
3
August, 2017
2
January, 2022
2
May, 2022
1
July, 2020
1
November, 2019
Available data
559
bed bed3+
326
tsv
169
bigWig
78
txt
54
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
965
Homo sapiens
Biosample type
825
primary cell
71
tissue
49
cell line
20
in vitro differentiated cells
Organ
938
epithelium
649
kidney
452
connective tissue
428
brain
366
musculature of body
310
lung
287
intestine
268
pancreas
257
vasculature
242
heart
235
limb
218
bodily fluid
214
embryo
207
blood
204
skin of body
192
blood vessel
173
large intestine
148
liver
146
extraembryonic component
118
stomach
89
bone element
87
eye
87
mammary gland
83
small intestine
83
uterus
80
adipose tissue
78
prostate gland
73
placenta
72
adrenal gland
69
artery
64
penis
64
ureter
62
lymph node
49
gonad
48
thymus
44
esophagus
40
spinal cord
33
spleen
26
testis
24
lymphatic vessel
24
lymphoid tissue
23
thyroid gland
22
nerve
22
ovary
22
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
vagina
9
urinary bladder
5
trachea
4
nose
1
pericardium
Project
654
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
616
hg19
250
GRCh38
month_released!
March, 2020
November, 2022
BIOSAMPLE
TYPE
965 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
3
2
2
1
1
2
hepatocyte
9
8
3
2
1
1
2
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
3
6
5
2
1
+ See 147 more…
tissue
testis
1
1
3
7
3
1
1
1
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
pigmented layer of retina
11
kidney epithelium
1
1
+ See 17 more…
cell line
EndoC_BH1
8
8
3
1
NT2-D1 cell
1
1
1
1
2
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
+ See 8 more…
in vitro differentiated cells
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
+ See 3 more…
See all biosamples
Download