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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
41
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
400
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
457
Homo sapiens
Biosample type
455
tissue
2
primary cell
1
in vitro differentiated cells
Organ
765
pancreas
683
liver
604
connective tissue
458
adipose tissue
407
epithelium
322
kidney
289
heart
161
vasculature
159
bone element
156
blood vessel
121
artery
97
brain
73
limb
68
blood
68
bodily fluid
58
eye
58
musculature of body
25
embryo
19
lung
19
nerve
18
ureter
16
skeleton
15
spleen
6
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
458
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
458
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
March, 2020
September, 2020
target.investigated_as!
histone modification
other post-translational modification
BIOSAMPLE
ASSAY
458 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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