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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 60total RNA-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 99DNA binding
  • 66Transcription
  • 56DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 11July, 2019
  • 6August, 2021
  • 5June, 2019
  • March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 179bam
  • 149bigWig
  • 129bed narrowPeak
  • 79bigBed narrowPeak
  • 66tsv
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 6tagAlign
  • 3fastq
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hic
  • 1tar
Organism
  • 226Homo sapiens
Biosample type
  • 130tissue
  • 66cell line
  • 30primary cell
Organ
  • 932pancreas
  • 788liver
  • 682connective tissue
  • 518epithelium
  • 490adipose tissue
  • 386heart
  • 352kidney
  • 284brain
  • 232vasculature
  • 226blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 91musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1skin of body
  • 1spinal cord
  • 1thymus
Project
  • 226AMP
Genome assembly (visualization)
  • 186GRCh38
  • 156hg19
Lab
  • 226AMP-T2D consortium
Audit category:
  • 1audit script error
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

226 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery51362
tibial artery23112
aorta1342
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17211
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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