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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
37
total RNA-seq
36
DNase-seq
32
ATAC-seq
4
RRBS
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
Assay category
223
DNA binding
69
DNA accessibility
44
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
107
October, 2019
91
November, 2017
37
June, 2019
32
February, 2023
28
May, 2019
21
July, 2019
16
October, 2017
13
February, 2020
March, 2020
2
November, 2018
Available data
251
bam
236
bed narrowPeak
229
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
30
tsv
21
fastq
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
347
Homo sapiens
Biosample type
320
tissue
27
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
347
AMP
Genome assembly (visualization)
224
GRCh38
200
hg19
Lab
347
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2020
organ_slims!
small intestine
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
RRBS
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
20
1
14
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
+ See 4 more…
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