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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
DNase-seq
48
ChIP-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
1
WGBS
Assay category
81
DNA accessibility
48
DNA binding
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
62
June, 2019
35
October, 2019
23
July, 2019
18
November, 2017
15
February, 2020
6
February, 2021
4
May, 2019
4
October, 2017
March, 2020
2
November, 2018
1
February, 2023
Available data
143
bam
99
bigWig
80
bed narrowPeak
72
bigBed narrowPeak
71
bed bed3+
71
bed broadPeak
71
bigBed broadPeak
31
tsv
19
tagAlign
11
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
170
Homo sapiens
Biosample type
152
tissue
18
primary cell
Organ
784
pancreas
686
liver
604
connective tissue
458
adipose tissue
426
epithelium
322
kidney
289
heart
161
vasculature
159
bone element
156
blood vessel
121
artery
97
brain
73
limb
68
blood
68
bodily fluid
58
eye
58
musculature of body
25
embryo
19
lung
19
nerve
18
spleen
18
ureter
16
skeleton
6
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
170
AMP
Genome assembly (visualization)
98
GRCh38
95
hg19
Lab
170
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
March, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
170 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
FAIRE-seq
WGBS
tissue
brain
14
3
1
1
1
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
+ See 41 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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