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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
Assay category
180
DNA binding
Target of assay
378
transcription factor
181
histone modification
180
histone
143
control
93
narrow histone mark
86
broad histone mark
82
recombinant protein
68
RNA binding protein
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
101
August, 2017
27
May, 2020
17
December, 2017
15
November, 2017
8
June, 2019
6
August, 2021
6
October, 2019
Available data
117
bigWig
115
bed narrowPeak
113
bam
77
tagAlign
70
fastq
44
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
180
Homo sapiens
Biosample type
102
tissue
49
in vitro differentiated cells
18
cell line
11
primary cell
Organ
187
brain
148
pancreas
102
liver
97
heart
92
epithelium
78
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
180
AMP
Genome assembly (visualization)
117
hg19
103
GRCh38
Lab
177
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
month_released!
March, 2020
organ_slims!
blood
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ChIP-seq
tissue
liver
64
subcutaneous abdominal adipose tissue
31
right lobe of liver
5
adipose tissue
1
islet of Langerhans
1
in vitro differentiated cells
adipocyte
37
hepatocyte
12
cell line
HepG2
18
primary cell
mesenchymal stem cell
6
hepatocyte
3
cardiac fibroblast
2
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