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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
ChIP-seq
188
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
344
DNA binding
192
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
histone modification
102
histone
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
219
November, 2017
167
May, 2020
43
December, 2017
40
May, 2022
32
November, 2018
29
August, 2021
21
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
495
bam
434
bigWig
315
fastq
256
bed narrowPeak
219
bigBed narrowPeak
172
tsv
45
bed broadPeak
45
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
580
Homo sapiens
Biosample type
286
tissue
281
cell line
11
primary cell
2
in vitro differentiated cells
Organ
784
pancreas
602
connective tissue
580
liver
458
adipose tissue
425
epithelium
315
kidney
289
heart
161
vasculature
159
bone element
156
blood vessel
121
artery
97
brain
73
limb
58
blood
58
bodily fluid
58
eye
58
musculature of body
25
embryo
19
lung
19
nerve
18
spleen
18
ureter
16
skeleton
6
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
580
AMP
Genome assembly (visualization)
439
hg19
358
GRCh38
Lab
512
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
March, 2020
target.investigated_as!
chromatin remodeller
histone modification
recombinant protein
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
78
166
20
2
3
1
1
1
right lobe of liver
5
3
1
2
1
2
cell line
HepG2
258
14
1
1
2
2
2
1
primary cell
hepatocyte
1
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
2
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