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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
  • 188total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 3Hi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 2pCHi-C
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 552DNA binding
  • 192Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 63December, 2017
  • 54August, 2017
  • 53November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 680bam
  • 621bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 172tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 1bed bed3
  • 1bedpe bed3+
  • 1csv
  • 1hdf5
  • 1hic
  • 1vcf
Organism
  • 788Homo sapiens
Biosample type
  • 401cell line
  • 358tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 932pancreas
  • 788liver
  • 682connective tissue
  • 518epithelium
  • 490adipose tissue
  • 386heart
  • 352kidney
  • 284brain
  • 232vasculature
  • 226blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 91musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1skin of body
  • 1spinal cord
  • 1thymus
Project
  • 788AMP
Genome assembly (visualization)
  • 623hg19
  • 530GRCh38
Lab
  • 717AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

788 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG237814112221
tissue
liver1451662023111
right lobe of liver1031212
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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