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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
14
August, 2017
10
July, 2019
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
50
bigWig
47
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
7
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
71
Homo sapiens
Biosample type
61
tissue
10
primary cell
Organ
854
pancreas
746
liver
638
connective tissue
474
epithelium
470
adipose tissue
337
kidney
329
heart
214
brain
187
vasculature
181
blood vessel
159
bone element
127
artery
88
limb
71
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
20
spleen
19
lung
18
ureter
16
skeleton
12
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
71
AMP
Genome assembly (visualization)
53
hg19
43
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
month_released!
March, 2020
organ_slims!
esophagus
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
71 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
4
1
1
1
1
1
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
4
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
1
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