Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 392total RNA-seq
  • 215ChIP-seq
  • 148ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 8DNase-seq
  • 8Hi-C
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 474Transcription
  • 215DNA binding
  • 169DNA accessibility
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 148histone
  • 148histone modification
  • 78broad histone mark
  • 70narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 188August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 61May, 2021
  • 56February, 2023
  • 55November, 2019
  • 53October, 2018
  • 39April, 2018
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • March, 2020
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 683bam
  • 613bigWig
  • 471fastq
  • 411tsv
  • 211bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bigBed broadPeak
  • 6bed bedMethyl
  • 6bedpe bed3+
  • 6bigBed bedMethyl
  • 6hic
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 924Homo sapiens
Biosample type
  • 496tissue
  • 346primary cell
  • 87cell line
  • 3in vitro differentiated cells
Organ
  • 932pancreas
  • 788liver
  • 682connective tissue
  • 518epithelium
  • 490adipose tissue
  • 386heart
  • 352kidney
  • 284brain
  • 232vasculature
  • 226blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 91musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1skin of body
  • 1spinal cord
  • 1thymus
Project
  • 753AMP
  • 152HPAP
  • 27T1D
Genome assembly (visualization)
  • 647hg19
  • 629GRCh38
Lab
  • 711AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 76inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

932 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans27648566741311
body of pancreas3354242
pancreas11624211
endocrine pancreas16
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
cell line
EndoC_BH13114176121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego