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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
total RNA-seq
Assay category
17
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
March, 2020
1
February, 2020
1
May, 2021
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
1
tsv
Organism
23
Homo sapiens
Biosample type
21
primary cell
2
tissue
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
22
AMP
1
T1D
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
month_released!
March, 2020
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
C1 segment of cervical spinal cord
1
thymus
1
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