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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 60total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 102DNA binding
  • 66Transcription
  • 58DNA accessibility
  • 33D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • March, 2020
  • 3February, 2020
Available data
  • 184bam
  • 154bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 66tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2hdf5
  • 1hic
  • 1tar
Organism
  • 232Homo sapiens
Biosample type
  • 130tissue
  • 66cell line
  • 36primary cell
Organ
  • 932pancreas
  • 788liver
  • 682connective tissue
  • 518epithelium
  • 490adipose tissue
  • 386heart
  • 352kidney
  • 284brain
  • 232vasculature
  • 226blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 91musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1skin of body
  • 1spinal cord
  • 1thymus
Project
  • 232AMP
Genome assembly (visualization)
  • 190GRCh38
  • 162hg19
Lab
  • 232AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

232 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
coronary artery51362
tibial artery23112
aorta1342
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17211
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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