Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 752ChIP-seq
  • 233total RNA-seq
  • 191ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 20pCHi-C
  • 19RRBS
  • 15Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 752DNA binding
  • 339Transcription
  • 256DNA accessibility
  • 28DNA methylation
  • 153D chromatin structure
Target of assay
  • 420transcription factor
  • 258histone
  • 258histone modification
  • 150narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1150bam
  • 1065bigWig
  • 725bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 336tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 8hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1431Homo sapiens
Biosample type
  • 475primary cell
  • 453cell line
  • 325tissue
  • 175in vitro differentiated cells
  • 3stem cell
Organ
  • 425liver
  • 187pancreas
  • 163epithelium
  • 94brain
  • 66connective tissue
  • 58blood
  • 58bodily fluid
  • 56kidney
  • 47vasculature
  • 42blood vessel
  • 38heart
  • 21musculature of body
  • 18vein
  • 16adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2pericardium
  • 1bone marrow
  • 1nerve
  • 1pituitary gland
  • 1spinal cord
  • 1thymus
Project
  • 1267AMP
  • 154T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1139hg19
  • 995GRCh38
Lab
  • 1213AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 117inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • March, 2020
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1431 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
cell line
HepG2335512112
GM1287856
Panc11111
EndoC_BH1163
H1-hESC8
tissue
islet of Langerhans20835611234
liver423111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
cardiac precursors (cardiac muscle cell)1911
embryonic stem cell1155
adipocyte71811
hepatocyte15
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego