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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 187total RNA-seq
  • 179ChIP-seq
  • 103ATAC-seq
  • 89single cell RNA-seq
  • 27DNase-seq
  • 11small RNA-seq
  • 7Hi-C
  • 5pCHi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 287Transcription
  • 179DNA binding
  • 138DNA accessibility
  • 73D chromatin structure
  • 1DNA methylation
Target of assay
  • 131histone
  • 131histone modification
  • 88narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • March, 2020
  • 30June, 2019
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 480bam
  • 462bigWig
  • 277tsv
  • 171bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 6bed bed3
  • 6hic
  • 5bedpe bed3+
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 625Homo sapiens
Biosample type
  • 301primary cell
  • 214tissue
  • 110in vitro differentiated cells
Organ
  • 129pancreas
  • 80epithelium
  • 69brain
  • 55connective tissue
  • 22heart
  • 19kidney
  • 16adipose tissue
  • 15liver
  • 8bone element
  • 8musculature of body
  • 8skeleton
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1spinal cord
Project
  • 487AMP
  • 134T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 487hg19
  • 424GRCh38
Lab
  • 451AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

625 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans8201661224
liver2611
brain612
heart21411
frontal cortex2211
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell5114
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
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