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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
3
single cell RNA-seq
Assay category
215
DNA binding
3
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
88
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
3
July, 2019
Available data
196
bam
172
bigWig
167
bed narrowPeak
118
tagAlign
91
bigBed narrowPeak
15
fastq
12
bed broadPeak
3
bigBed broadPeak
3
tsv
1
tagAlign bed3+
Organism
218
Homo sapiens
Biosample type
209
tissue
9
primary cell
Organ
218
brain
211
liver
204
pancreas
123
epithelium
117
heart
113
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
19
embryo
17
vein
14
spleen
7
blood
7
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
218
AMP
Genome assembly (visualization)
171
GRCh38
123
hg19
Lab
218
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2023
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
single cell RNA-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
cerebellar granule cell
2
choroid plexus epithelial cell
2
Purkinje cell
1
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