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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
33
ChIP-seq
4
DNase-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
33
DNA binding
Target of assay
22
histone
22
histone modification
14
broad histone mark
8
narrow histone mark
7
control
4
transcription factor
Date released
66
February, 2021
35
February, 2023
30
October, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
March, 2020
Available data
97
bam
82
bigWig
71
bed narrowPeak
60
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
73
tissue
67
cell line
2
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
142
AMP-T2D consortium
month_released!
May, 2019
organ_slims!
lung
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
36
2
tibial artery
1
1
23
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
MCF-7
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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