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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
1
pCHi-C
Assay category
59
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
5
histone
histone modification
5
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
1
March, 2020
Available data
67
bam
61
bed narrowPeak
59
fastq
54
bigWig
53
bigBed narrowPeak
4
bed bed3
4
txt
1
tsv
Organism
85
Homo sapiens
Biosample type
60
cell line
17
tissue
8
primary cell
Organ
794
pancreas
688
liver
606
connective tissue
459
adipose tissue
429
epithelium
322
kidney
288
heart
159
bone element
151
vasculature
146
blood vessel
118
artery
96
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
8
T1D
Genome assembly (visualization)
66
hg19
61
GRCh38
Lab
77
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
May, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
pCHi-C
cell line
GM12878
59
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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primary cell
peripheral blood mononuclear cell
8
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